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2009
Abramson, L., S. Wirick, C. Lee, C. Jacobsen, and J. A. Brandes. 2009. The use of soft x-ray spectromicroscopy to investigate the distribution and composition of organic matter in a diatom frustule and a biomimetic analog. Deep-Sea Research Part II: Topical Studies in Oceanography 56(18): 1369-1380. doi: 10.1016/j.dsr2.2008.11.031
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Alexander, C., and H. Lee. 2009. Sediment accumulation on the Southern California Bight continental margin during the twentieth century. In Special Paper 454, Earth Science in the Urban Ocean: The Southern California Continental Borderland, ed. H. J. Lee, and W. R. Normark, 69-88. Boulder Colorado: Geological Society of America, Inc.
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Armstrong, R. A., C. Lee, M. L. Peterson, J. K. Cochran, and S. G. Wakeham. 2009. Settling velocity spectra and the ballast ratio hypothesis. Deep Sea Research Part II: Topical Studies in Oceanography 56(18): 1470-1478. doi: 10.1016/j.dsr2.2008.11.032
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Blanton, J. O., A. J. Garrett, J. S. Bollinger, D. W. Hayes, L. D. Koffman, and J. Amft. 2009. Transport and dispersion of a conservative tracer in coastal waters with large intertidal areas. Estuaries and Coasts 32(3): 573-592. doi: 10.1007/s12237-009-9141-4
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Brandes, J. A. 2009. Rapid and precise δ13C measurement of dissolved inorganic carbon in natural waters using liquid chromatography coupled to an isotope-ratio mass spectrometer. Limnology and Oceanography: Methods 7(11): 730-739. doi: 10.4319/lom.2009.7.730
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Brandes, J. A., R. M. Hazen, and H. S. Yoder, Jr. 2009. Inorganic nitrogen reduction and stability under simulated hydrothermal conditions. Astrobiology 8(6): 1113-1126. doi: 10.1089/ast.2007.0187
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Canuel, E. A., E. J. Lerberg, R. M. Dickhut, S. S. Kuehl, T. S. Bianchi, and S. G. Wakeham. 2009. Changes in sediment and organic carbon accumulation in a highly-disturbed ecosystem: The Sacramento-San Joaquin River Delta, (California, U.S.A.). Marine Pollution Bulletin 59(4-7): 154-163. doi: 10.1016/j.marpolbul.2009.03.025
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Cody, G. D., J. Brandes, C. Jacobsen, and S. Wirick. 2009. Soft X-ray induced chemical modification of polysaccharides in vascular plant cell walls. Journal of Electron Spectroscopy and Related Phenomena 170(1-3): 57-64. doi: 10.1016/j.elspec.2008.09.007
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Deibel, D., and G.-A. Paffenhöfer. 2009. Predictability of patches of neritic salps and doliolids (Tunicata, Thaliacea). Journal of Plankton Research 31(12): 1571-1579. doi: 10.1093/plankt/fbp091
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Diaz, J., E. Ingall, S. Vogt, M. D. de Jonge, D. Paterson, C. Rau, and J. A. Brandes. 2009. Characterization of phosphorus, calcium, iron, and other elements in organisms at sub-micron resolution using X-ray fluorescence spectromicroscopy. Limnology and Oceanography: Methods 7(1): 42-51. doi:10.4319/lom.2009.7.42
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Helms, J. R., A. Stubbins, J. D. Ritchie, E. C. Minor, D. J. Kieber, and K. Mopper. 2009. Erratum: Absorption spectral slopes and slope ratios as indicators of molecular weight, source, and photobleaching of chromophoric dissolved organic matter. Limnology and Oceanography 54(3): 1023. doi: 10.4319/lo.2009.54.3.1023.
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Lee, C., M. L. Peterson, S. G. Wakeham, R. A. Armstrong, J. K. Cochran, J. C. Miquel, S. W. Fowler, D. Hirschberg, A. Beck, and J. Xue. 2009. Particulate organic matter and ballast fluxes measured using time-series and settling velocity sediment traps in the northwestern Mediterranean Sea. Deep-Sea Research Part II: Topical Studies in Oceanography 56(18): 1420-1436. doi: 10.1016/j.dsr2.2008.11.029
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Lee, C., R. A. Armstrong, J. K. Cochran, A. Engel, S. W. Fowler, M. Goutx, P. Masqué, J. C. Miquel, M. Peterson, C. Tamburini, and S. Wakeham. 2009. MedFlux: Investigations of particle flux in the Twilight Zone. Deep-Sea Research Part II: Topical Studies in Oceanography 56(18): 1363-1368. doi: 10.1016/j.dsr2.2008.12.003
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Lehmann, J., J. Brandes, H. Fleckenstein, C. Jacobson, D. Solomon, and J. Thieme. 2009. Synchrotron-based near-edge X-ray spectroscopy of natural organic matter in soils and sediments. In Biophysico-Chemical Processes Involving Natural Nonliving Organic Matter in Environmental Systems, ed. P. M. Huang, and N. Senesi. Hoboken: Wiley.
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Liu, Z., J. K. Cochran, C. Lee, B. Gasser, J. C. Miquel, and S. G. Wakeham. 2009. Further investigations on why POC concentrations differ in samples collected by Niskin bottle and in situ pump. Deep-Sea Research Part II: Topical Studies in Oceanography 56(18): 1558-1567. doi: 10.1016/j.dsr2.2008.12.019
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Liu, Z., J. Mao, M. L. Peterson, C. Lee, S. G. Wakeham, and P. G. Hatcher. 2009. Characterization of sinking particles from the northwest Mediterranean Sea using advanced solid-state NMR. Geochimica et Cosmochimica Acta 73(4): 1014-1026. doi: 10.1016/j.gca.2008.11.019
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Muri, G., and S. G. Wakeham. 2009. Effect of depositional regimes on polycyclic aromatic hydrocarbons in Lake Bled (NW Slovenia) sediments. Chemosphere 77(1): 74-79. doi: 10.1016/j.chemosphere.2009.05.023
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Muri, G., and S. G. Wakeham. 2009. Source assessment and sedimentary record of pyrolytic polycyclic aromatic hydrocarbons in Lake Bled (NW Slovenia). Acta Chimica Slovenica 56(2): 315-321.
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Peterson, M. L., J. Fabres, S. G. Wakeham, C. Lee, I. J. Alonso and J. C. Miquel. 2009. Sampling the vertical particle flux in the upper water column using a large diameter free-drifting NetTrap adapted to an indented rotating sphere sediment trap. Deep-Sea Research II: Topical Studies in Oceanography 56(18): 1547-1557. doi: 10.1016/j.dsr2.2008.12.020
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Rontani, J. -F., N. Zabeti, and S. G. Wakeham. 2009. The fate of marine lipids: Biotic vs. abiotic degradation of particulate sterols and alkenones in the Northwestern Mediterranean Sea. Marine Chemistry 113(1-2): 9-18. doi: 10.1016/j.marchem.2008.11.001
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Ryan, H. F., H. J. Lee, P. J. Haeussler, C. R. Alexander, and R. E. Kayen. 2009. Historic and paleo-submarine landslide deposits imaged beneath Port Valdez, Alaska: implications for tsunami generation in a glacial fiord. In Submarine Mass Movements and Their Consequences, Vol 28, eds. D. C. Mosher, C. Shipp, L. Moscardelli, J. Chaytor, C. Baxter, H. Lee, R. Urgeles (eds.), 1-8. Advances in Natural and Technological Hazards Research. Springer
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Savidge, D. K., and J. A. Amft. 2009. Circulation on the West Antarctic Peninsula derived from 6 years of shipboard ADCP transects, Deep-Sea Research Part I: Oceanographic Research Papers 56(10): 1633-1655.
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Savidge, W. B., and J. A. Brandes. 2009. Addressing challenges for chemical oceanography: Unknown knowns and known unknowns: Chemical oceanography in a changing world; Savannah, Georgia, 22–24 February 2009. EOS Transactions 90(20): 176. doi: 10.1029/2009EO200004
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Schubotz, F., S. G. Wakeham, J. S Lipp, H. F. Fredericks, and K.-U. Hinrichs. 2009. Detection of microbial biomass by intact polar membrane lipid analysis in the water column and surface sediments of the Black Sea. Environmental Microbiology 11(10): 2720-2734. doi: 10.1111/j.1462-2920.2009.01999.x
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Simonelli, P., C. Troedsson, J. C. Nejstgaard, K. Zech, J. B. Larsen, and M. E. Frischer. 2009. Evaluation of DNA extraction and handling procedures for PCR-based copepod feeding studies. Journal of Plankton Research 31(12): 1465-1474. doi: 10.1093/plankt/fbp087
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Spencer, R. G. M., A. Stubbins, P. J. Hernes, A. Baker, K. Mopper, A. K. Aufdenkampe, R. Y. Dyda, V. L. Mwamba, A. M. Mangangu, J. N. Wabakanghanzi, and J. Six. 2009. Photochemical degradation of dissolved organic matter and dissolved lignin phenols from the Congo River. Journal of Geophysical Research Biogeosciences 114, G03010, doi:10.1029/2009JG000968
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Tamburini, C., M. Goutx, C. Guigue, M. Garel, D. Lefèvre, B. Charrière, R. Sempéré, S. Pepa, M. L. Peterson, S. Wakeham, and C. Lee. 2009. Effects of hydrostatic pressure on microbial alteration of sinking fecal pellets. Deep-Sea Research II: Topical Studies in Oceanography 56(18): 1533-1546. doi: 10.1016/j.dsr2.2008.12.035.
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Troedsson, C., J. -M. Bouquet, R. Skinnes, J. -L. Acuña, K. Zech, M. E. Frischer, and E. M. Thompson. 2009. Regulation of filter-feeding house components in response to varying food regimes in the appendicularian, Oikopleura dioica. Journal of Plankton Research 31(12): 1453-1463. doi: 10.1093/plankt/fbp085
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Troedsson, C., P. Simonelli, V. Nägele, J. C. Nejstgaard, and M. E. Frischer. 2009. Quantification of copepod gut content by differential length amplification quantitative PCR (dla-qPCR). Marine Biology 156(3): 253-259. doi: 10.1007/s00227-008-1079-8
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Veilleux, M.-H., A. F. Dickens, J. Brandes, and Y. Gèlinas. 2009. Density separation of combustion-derived soot and petrogenic graphitic black carbon: quantification and isotopic characterization. From Deep-sea to Coastal Zones: Methods and Techniques for Studying Paleoenvironments, IOP Conference Series: Earth and Environmental Science 5(1) (2009) 012010 (Proceeding – peer reviewed) doi: 10.1088/1755-1307/5/1/012010
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Wakeham, S. G., C. Lee, M. L. Peterson, Z. Liu, J. Szlosek, I. F. Putnam, and J. Xue. 2009. Organic biomarkers in the twilight zone—Time series and settling velocity sediment traps during MedFlux. Deep-Sea Research Part II: Topical Studies in Oceanography 56(18): 1437-1453. doi: 10.1016/j.dsr2.2008.11.030
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Wakeham, S. G., E. A. Canuel, E. J. Lerberg, P. Mason, T. Sampere, and T. Bianchi. 2009. Partitioning of organic matter in continental margin sediments among density fractions. Marine Chemistry 115(3-4): 211-225. doi:10.1016/j.marchem.2009.08.005
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Walker, A. N., R. F. Lee, and M. E. Frischer. 2009. Transmission of the parasitic dinoflagellate Hematodinium sp. infection in blue crabs Callinectes sapidus by cannibalism. Diseases of Aquatic Organisms 85(3): 193-197. doi: 10.3354/dao02072
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Wimbush, J., M. E. Frischer, J. W. Zarzynski, and S. A. Nierzwicki-Bauer. 2009. Eradication of colonizing populations of zebra mussels ( Dreissena polymorpha ) by early detection and SCUBA removal: Lake George, NY. Aquatic Conservation-Marine and Freshwater Ecosystems 19(6): 703-713. doi: 10.1002/aqc.1052
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Windom, H. L., A. Piola, and B. McKee. 2009. Carbon and nutrient cycling in the southwestern Atlantic Ocean: State of knowledge on the southwestern Atlantic Ocean margin; Montevideo, Uruguay, 16-22 November 2008. EOS Transactions 90(11): 93. doi: 10.1029/2009EO110014
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2008
Alexander, C. R., ed. 2008. Coastal and Marine Geology of the Southeastern United States. Special issue, Southeastern Geology 45(3), Preface, p. i.
Not available online
Antia, A. N., K. Suffrian, L. Holste, M. N. Müller, J. C. Nejstgaard, P. Simonelli, Y. Carotenuto, and S. Putzeys. 2008. Dissolution of coccolithophorid calcite by microzooplankton and copepod grazing. (Revised manuscript was not submitted) doi: 10.5194/bgd-5-1-2008
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Brandes, J. A., G. D. Cody, D. Rumble, P. Haberstroh, S. Wirick, and Y. Gelinas. 2008. Carbon K-edge XANES spectromicroscopy of natural graphite. Carbon 46(11): 1424-1434. doi: 10.1016/j.carbon.2008.06.020
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Dale, V. H., G. R. Biddinger, M. C. Newman, J. T. Oris, G. W. Suter, T. Thompson, T. M. Armitage, J. L. Meyer, R. M. Allen-King, G. A. Burton, P. M. Chapman, L. L. Conquest, I. J. Fernandez, W. G. Landis, L. L. Master, W. J. Mitsch, T. C. Mueller, C. F. Rabeni, A. D. Rodewald, J. G. Sanders, and I. L. Heerden. 2008. Enhancing the ecological risk assessment process. Integrated Environmental Assessment and Management 4(3): 306-313. doi: 10.1897/IEAM_2007-066.1
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Diaz, J., E. Ingall, C. Benitez-Nelson, D. Paterson, M. D. de Jonge, I. McNulty, and J. A. Brandes. 2008. Marine polyphosphate: A key player in geologic phosphorus sequestration. Science 320(5876): 652-655. doi: 10.1126/science.1151751
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Edwards, C. R., and H. E. Seim. 2008. Complex EOF analysis as a method to separate barotropic and baroclinic velocity structure in shallow water. Journal of Atmospheric and Oceanic Technology 25(5): 808-821. doi: 10.1175/2007JTECHO562.1
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George, S. B., C. Fox, and S. G. Wakeham. 2008. Fatty acid composition of larvae of the sand dollar Dendraster excentricus (Echinodermata) might reflect FA composition of the diets. Aquaculture 285(1-4): 167-173. doi: 10.1016/j.aquaculture.2008.08.0.10
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Helms, J. R., A. Stubbins, J. D. Ritchie, E. C. Minor, D. J. Kieber, and K. Mopper. 2008. Absorption spectral slopes and slope ratios as indicators of molecular weight, source, and photobleaching of chromophoric dissolved organic matter. Limnology & Oceanography 53(3): 955-969. doi: 10.4319/lo.2008.53.3.0955
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Hitchcock, G. L., W. S. Arnold, M. Frischer, C. Kelble, and R. W. Cowen. 2008. Short-term dispersal of an intentionally-released patch of larval Mercenaria in the Indian River Lagoon, Florida, USA. Bulletin of Marine Science 82(1): 41-57.
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Huang, H., C. Chen, J. O. Blanton, and F. A. Andrade. 2008. A numerical study of tidal asymmetry in Okatee Creek, South Carolina. Estuarine, Coastal and Shelf Science 78(1): 190-202. doi: 10.1016/j.ecss.2007.11.027
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Jahnke, D. B., and R. A. Jahnke. 2008. Dynamics of seafloor processes: Advances from benthic observing technologies. Oceanography 21(4): 162-163. doi: 10.5670/oceanog.2008.12
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Jahnke, R. A. 2008. Maybe it’s not just about air-water gas exchange. 2008. Oceanography 21(4): 42-43. [Note: Jahnke’s article is a sidebar item embedded within Edson et al., Investigations of Air-Sea Gas Exchange in the CoOP Coastal Air-Sea Chemical Exchange Project, pp. 34-45, in the same journal volume] doi: 10.5670/oceanog.2008.03
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Jahnke, R. A., J. R. Nelson, M. E. Richards, C. Y. Robertson, A. M. F. Rao, and D. B. Jahnke. 2008. Benthic primary productivity on the Georgia midcontinental shelf: Benthic flux measurements and high-resolution, continuous in situ PAR records. Journal of Geophysical Research 113(C8): C08022. doi: 10.1029/2008JC004745
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Jahnke, R. A., M. R. Roman, and K. H. Brink. 2008. Coastal ocean processes program: Advancing interdisciplinary research and technology development. Oceanography 21(4): 18-21. doi: 10.5670/oceanog.2008.01
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Jiang, H., and G. -A. Paffenhöfer. 2008. Hydrodynamic signal perception by the copepod Oithona plumifera. Marine Ecology Progress Series 373: 37-52. doi: 10.3354/meps07749
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Köster, M., C. Krause, and G. -A. Paffenhöfer. 2008. Time-series measurements of oxygen consumption of copepod nauplii. Marine Ecology Progress Series 353:157-164. doi: 10.3354/meps07185
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Lee, R. F., W. Hagen, and G. Kattner. 2008. Lipid storage in marine zooplankton. Marine Ecology Progress Series 307:273-306. doi: 10.3354/meps307273
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Measures, C. I., W. M. Landing, M. T. Brown, and C. S. Buck. 2008. A commercially available rosette system for trace metal—clean sampling. Limnology and Oceanography: Methods 6(9): 384-394. doi: 10.4319/lom.2008.6.384
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Measures, C. I., W. M. Landing, M. T. Brown, and C. S. Buck. 2008. High resolution Al and Fe data from the Atlantic Ocean CLIVAR-CO2 Repeat Hydrography A16N transect: Extensive linkages between atmospheric dust and upper ocean geochemistry. Global Biogeochemical Cycles 22(1), GB1005. doi: 10.1029/2007GB003042
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Nejstgaard, J. C., M. E. Frischer, P. Simonelli, C. Troedsson, M. Brakel, F. Adiyaman, A. F. Sazhin, and L. F. Artigas. 2008. Quantitative PCR to estimate copepod feeding. Marine Biology 153(4): 565-577. doi: 10.1007/s00227-007-0830-x
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Percent, S. F., M. E. Frischer, P. A. Vescio, E. B. Duffy, V. Milano, M. McLellan, B. M. Stevens, C. W. Boylen, and S. A. Nierzwicki-Bauer. 2008. Bacterial community structure of acid-impacted lakes: What controls diversity? Applied and Environmental Microbiology 74(6): 1856-1868. doi: 10.1128/AEM.01719-07
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Rontani, J.-F., and S. G. Wakeham. 2008. Alteration of alkenone unsaturation ratio with depth in the Black Sea: Potential roles of stereomutation and aerobic biodegradation. Organic Geochemistry 39(9): 1259-1268. doi: 10.1016/j.orggeochem.2008.06.002
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Sajdel-Sulkowska, E. M., B. Lipinski, H. Windom, T. Audhya, and W. McGinnis. 2008. Oxidative stress in autism: Elevated cerebellar 3-nitrotyrosine levels. American Journal of Biochemistry and Biotechnology 4(2): 73-84. doi: 10.3844/ajbbsp.2008.73.84
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Sampere, T. P., T. S. Bianchi, S. G. Wakeham, and M. A. Allison. 2008. Sources of organic matter in surface sediments of the Louisiana Continental margin: Effects of major depositional/transport pathways and Hurricane Ivan. Continental Shelf Research 28(17): 2472-2487. doi: 10.1016/j.csr.2008.06.009
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Sanderson, M. P., D. A. Bronk, J. C. Nejstgaard, P. G. Verity, A. F. Sazhin, and M. E. Frischer. 2008. Phytoplankton and bacterial uptake of inorganic and organic nitrogen during an induced bloom of Phaeocystis pouchetii. Aquatic Microbial Ecology 51(2): 153-168. doi: 10.3354/ame01178
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Savidge, W. B., A. Gargett, R. A. Jahnke, J. R. Nelson, D. K. Savidge, R. T. Short, and G. Voulgaris. 2008. Forcing and dynamics of seafloor-water column exchange on a broad continental shelf. Oceanography 21(4): 179-184. doi: 10.5670/oceanog.2008.16
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Schulz, K. G., U. Riebesell, R. G. J. Bellerby, H. Biswas, M. Meyerhöfer, M. N. Müller, J. K. Egge, J. C. Nejstgaard, C. Neill, J. Wohlers, and E. Zöllner. 2008. Build-up and decline of organic matter during PeECE III. Biogeosciences 5(3): 707-718. doi: 10.5194/bg-5-707-2008
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Shay, L. K., H. Seim, D. Savidge, R. Styles, and R. H. Weisberg. 2008. High frequency radar observing systems in SEACOOS: 2002-2007 lessons learned. Marine Technical Society Journal 42(3): 55-67.
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Stubbins, A., V. Hubbard, G. Uher, C. S. Law, R. C. Upstill-Goddard, G. Aiken, and K. Mopper. 2008. Relating carbon monoxide photoproduction to dissolved organic matter functionality. Environmental Science & Technology 42(9): 3271-3276. doi: 10.1021/es703014q
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Suffrian, K., P. Simonelli, J. C. Nejstgaard, S. Putzeys, Y. Carotenuto, and A. N. Antia. 2008. Microzooplankton grazing and phytoplankton growth in marine mesocosms with increased CO2 levels. Biogeosciences 5(4): 1145-1156. doi: 10.5194/bg-5-1145-2008
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Thingstad, T. F., R. G. J. Bellerby, G. Bratbak, K. Y. Børsheim, J. K. Egge, M. Heldal, A. Larsen, C. Neill, J. Nejstgaard, S. Norland, R. A. Sandaa, E. F. Skjoldal, T. Tanaka, R. Thyrhaug, and B. Töpper. 2008. Counterintuitive carbon-to-nutrient coupling in an Arctic pelagic ecosystem. Nature 455: 387-390. doi: 10.1038/nature07235
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Townsend-Small, A., M. E. McClain, B. Hall, C. Llerena, J. L. Noruera, and J. A. Brandes. 2008. Suspended sediments and organic matter in mountain headwaters of the Amazon River: Results from a 1-year time series study in the central Peruvian Andes. Geochimica et Cosmochimica Acta 72(3): 732-740. doi: 10.1016/j.gca.2007.11.020.
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Troedsson, C., R. F. Lee, T. Walters, V. Stokes, K. Brinkley, V. Naegele, and M. E. Frischer. 2008. Detection and discovery of crustacean parasites in blue crabs (Callinectes sapidus) by using 18S rRNA gene-targeted denaturing high-performance liquid chromatography. Applied and Environmental Microbiology 74(14): 4346-4353. doi: 10.1128/AEM.02132-07
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Turich, C. 2008. Erratum to Courtney Turich, Katherine H. Freeman, Mary Ann Bruns, Maureen Conte, A. Daniel Jones and Stuart G. Wakeham (2007) “Lipids of marine Archaea: Patterns and provenance in the water-column and sediments” Geochimica et Cosmochimica Acta 71 3272-3291. Geochimica et Cosmochimica Acta 72(13): 3287-3288. doi: 10.1016/j.gca.2008.01.035
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Turich, C., K. H. Freeman, A. D. Jones, M. A. Bruns, M. Conte, and S. G. Wakeham. 2008. Reply to the comment by S. Schouten, M. van der Meer, E. Hopmans, and J. S. Sinninghe Damsté on “Lipids of marine Archaea: patterns and provenance in the water column”. Geochimica et Cosmochimica Acta 72(21): 5347-5349. doi: 10.1016/j.gca.2008.04.042
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Uttieri, M., G.-A. Paffenhöfer, and M. G. Mazzocchi. 2008. Prey capture in Clausocalanus furcatus (Copepoda: Calanoida). The role of swimming behaviour. Marine Biology 153(5): 925-935. doi: 10.1007/s00227-007-0864-0
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Wiggert, J. D., E. E. Hofmann, and G. -A. Paffenhöfer. 2008. A modelling study of developmental stage and environmental variability effects on copepod foraging. ICES Journal of Marine Science 65(3): 379-398. doi: 10.1093/icesjms/fsm193.
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Yoshinaga, M. Y., P. Y. G. Sumida, and S. G. Wakeham. 2008. Lipid biomarkers in surface sediments of an unusual coastal upwelling area from the SW Atlantic Ocean. Organic Geochemistry 39(10): 1385-1399. doi: 10.1016/j.orggeochem.2008.07.006
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2007
Brandes, J. A., A. H. Devol, and C. Deutsch. 2007. New developments in the marine nitrogen cycle. Chemical Reviews 107(2): 577-589. doi: 10.1021/cr050377t
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Brandes, J. A., E. Ingall, and D. Paterson. 2007. Characterization of minerals and organic phosphorus species in marine sediments using soft X-ray fluorescence spectromicroscopy. Marine Chemistry 103(3-4): 250-265. doi: 10.1016/j.marchem.2006.09.004
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Brouwer, M., and R. F. Lee. 2007. Response to toxic chemicals at the molecular, cellular, tissue, and organismal level. In The Blue Crab Callinectes sapidus, eds. V. S. Kennedy and L. E. Cronin, 485-512. College Park, Maryland: Maryland Sea Grant College, University of Maryland.
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Carotenuto, Y., S. Putzeys, P. Simonelli, A. Paulino, M. Meyerhöfer, K. Suffrian, A. Antia, J.C. Nejstgaard. 2007. Copepod feeding and reproduction in relation to phytoplankton development during the PeECE III mesocosm experiment. Biogeosciences Discussions 4(5): 3913-3936. doi: 10.5194/bgd-4-3913-2007
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Coolen, M. J. L., B. Abbas, J. van Bleijswijk, E. C. Hopmans, M. M. Kuypers, S. G. Wakeham and J. S. Sinninghe Damsté. 2007. Putative ammonia-oxidizing Crenarchaeota in suboxic waters of the Black Sea: A basin-wide ecological study using 16S ribosomal and functional genes and membrane lipids. Environmental Microbiology 9(4): 1001-1016. doi: 10.1111/j.1462-2920.2006.01227.x
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Gilligan, M. R., P. G. Verity, C. B. Cook, S. B. Cook, M. G. Booth, and M. E. Frischer. 2007. Building a diverse and innovative ocean workforce through collaboration and partnerships that integrate research and education: HBCUs and marine laboratories. Journal of Geoscience Education 55(6): 531-540. doi: 10.5408/1089-9995-55.6.531
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Goutx, M., S. G. Wakeham, C. Lee, M. Duflos, C. Guigue, Z. Liu, B. Moriceau, R. Sempére, M. Tedetti, and J. Xue. 2007. Composition and degradation of marine particles with different settling velocities in the northwestern Mediterranean Sea. Limnology and Oceanography 52(4): 1645-1664. doi: 10.4319/lo.2007.52.4.1645
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Jackson, C., C. Alexander, and D. Bush. 2007. Backbarrier shoreline change history: Cumberland Island, Georgia, 1857-2002. Southeastern Geology 45: 73-85.
Not available online
Jacobsen, A., A. Larsen, J. Martinez-Martinez, P. G. Verity, and M. E. Frischer. 2007. Susceptibility of colonies and colonial cells of Phaeocystis pouchetii (Haptophyta) to viral infection. Aquatic Microbial Ecology 48(2): 105-112. doi: 10.3354/ame048105
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Jaeschke, A., E. C. Hopmans, S. G. Wakeham, S. Schouten and J. S. Sinninghe Damsté. 2007. The presence of ladderane lipids in the oxygen minimum zone of the Arabian Sea indicates nitrogen loss through anammox. Limnology and Oceanography 52(2): 780-786. doi: 10.4319/lo.2007.52.2.0780
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Kattner, G., W. Hagen, R. F. Lee, R. Campbell, D. Diebel, S. Falk-Petersen, M. Graeve, B. W. Hansen, H. J. Hirche, S. H. Jónasdóttir, M. L. Madsen, P. Mayzaud, D. Müller-Navarra, P. D. Nichols, G.-A. Paffenhöfer, D. Pond, H. Saito, D. Stübing, and P. Virtue. 2007. Perspectives on marine zooplankton lipids. Canadian Journal of Fisheries and Aquatic Sciences 64(11): 1628-1639. doi: 10.1139/F07-122
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Larsen, J. B., M. E. Frischer, K. W. Ockelmann, L. J. Rasmussen, and B. W. Hansen. 2007. Temporal occurrence of planktotrophic bivalve larvae identified morphologically and by single step nested multiplex PCR. Journal of Plankton Research 29(5): 423-436. doi: 10.1093/plankt/fbm027
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Long, J. D., M. E. Frischer, and C. Y. Robertson. 2007. A Phaeocystis globosa bloom associated with upwelling in the subtropical South Atlantic Bight. Journal of Plankton Research 29(9): 769-774. doi: 10.1093/plankt/fbm058
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Minor, E. C., B. J. Dalzell, A. Stubbins, and K. Mopper. 2007. Evaluating the photoalteration of estuarine dissolved organic matter using direct temperature-resolved mass spectrometry and UV-visible spectroscopy. Aquatic Sciences 69(4): 440-455. doi: 10.1007/s00027-007-0897-y
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Mopper, K., A. Stubbins, J. D. Ritchie, H. M. Bialk, and P. G. Hatcher. 2007. Advanced instrumental approaches for characterization of marine dissolved organic matter: Extraction techniques, mass spectrometry and nuclear magnetic resonance spectroscopy. Chemical Reviews 107(2): 419-442. doi: 10.1021/cr050359b
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Muri, G. and S. G. Wakeham. 2007. Organic matter and lipids in sediments of Lake Bled (NW Slovenia): Source and effect of anoxic and oxic depositional regimes. Organic Geochemistry 37: 1644-1679. doi: 10.1016/j.orggeochem.2006.07.016
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Nejstgaard, J. C., K. W. Tang, M. Steinke, J. Dutz, M. Koski, E. Antajan, and J. D. Long. 2007. Zooplankton grazing on Phaeocystis: a quantitative review and future challenges. Biogeochemistry 83(1-3): 147-172. doi: 10.1007/s10533-007-9098-y
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Niencheski, L. F., H. L. Windom, W. S. Moore, and R. A. Jahnke. 2007. Submarine groundwater discharge of nutrients to the ocean along a coastal lagoon barrier, southern Brazil. Marine Chemistry 106(3-4): 546-561. doi: 10.1016/j.marchem.2007.06.004
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Paffenhöfer, G.-A., B. F. Sherr, and E. B. Sherr. 2007. From small scales to the big picture: persistence mechanisms of planktonic grazers in the oligotrophic ocean. Marine Ecology 28(2): 243-253. doi: 10.1111/j.1439-0485.2007.00162.x
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Power, C., R. Feldner, B. Scanlon, M. Frischer, and J. Richardson. 2007. Bacterial source tracking in the Vernon River watershed. In Proceedings of the 2007 Georgia Water Resources Conference March 27-29, 2007 University of Georgia, Athens, GA.
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Rampen, S. W., S. Schouten, S. G. Wakeham and J. S. Sinninghe Damsté. 2007. Seasonal and spatial variation in the sources and fluxes of long chain diols and mid-chain hydroxy methyl alkanoates in the Arabian Sea. Organic Geochemistry 38(2): 165-179. doi: 10.1016/j.orggeochem.2006.10.008
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Rao, A. M. F., M. J. McCarthy, W. S. Gardner, and R. A. Jahnke. 2007. Respiration and denitrification in permeable continental shelf deposits on the South Atlantic Bight: Rates of carbon and nitrogen cycling from sediment column experiments. Continental Shelf Research 27(13): 1801-1819. doi: 10.1016/j.csr.2007.03.001
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Savidge, D. K., and J. A. Austin. 2007. The Hatteras Front: August 2004 velocity and density structure. Journal of Geophysical Research – Oceans 112 (C07006). doi: 10.1029/2006JC003933
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Savidge, D. K., C. R. Edwards, and M. Santana. 2007. Baroclinic effects and tides on the Cape Hatteras continental shelf. Journal of Geophysical Research – Oceans. 112 (C09016): 1-16. doi: 10.1029/2006JC003832
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Savidge, W. B., R. A. Jahnke, J. R. Nelson, D. K. Savidge, G. Voulgaris, R. T. Short, and A. Gargett. 2007. Development of a coastal ocean benthic observatory to study sediment-water exchange processes. In Chemical Pollution and Environmental Changes, ed. S. Tanabe, H Takeoka, T. Isobe and Y. Nishibe, 383-392. Tokyo: Universal Academy Press.
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Sazhin, A. F., L. F. Artigas, J. C. Nejstgaard, and M. E. Frischer. 2007. The colonization of two Phaeocystis species (Prymnesiophyceae) by pennate diatoms and other protists: a significant contribution to colony biomass. Biogeochemistry 83(1-3): 137-145. doi: 10.1007/s10533-007-9086-2
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Seim, H. E., and C. R. Edwards. 2007. Comparison of buoy-mounted and bottom-moored ADCP performance at Gray’s Reef. Journal of Atmospheric and Oceanic Technology 24(2): 270-284. doi: 10.1175/JTECH1972.1
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Sommerfield, C. K., A. S. Ogston, B. L. Mullenbach, D. E. Drake, C. R. Alexander, C. A. Nittrouer, J. C. Borgeld, R. A. Wheatcroft, and E. L. Leithold. 2007. Oceanic dispersal and accumulation of river sediment. In Continental-Margin Sedimentation: from Sediment Transport to Sequence Stratigraphy, eds. C. A. Nittrouer, J. A. Austin, Jr., M. E. Field, J. H. Kravitz, J. P. M. Syvitski, and P. L. Wiberg, 157-212. IAS Special Publication 37: 608. Oxford: Blackwell Publishing, Ltd. doi: 10.1002/9781444304398.ch4
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Stewart, G., J. K. Cochran, J. Xue, C. Lee, S. G. Wakeham, R. A. Armstrong, P. Masqué, and J. C. Miquel. 2007. Exploring the connection between 210Po and organic matter in the northwestern Mediterranean. Deep-Sea Research 54(3): 415-427. doi: 10.1016/j.dsr.2006.12.006
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Townsend-Small, A., J. L. Noguera, M. E. McClain, and J. A. Brandes. 2007. Radiocarbon and stable isotope geochemistry of organic matter in the Amazon headwaters, Peruvian Andes. Global Biogeochemical Cycles 21(2): GB2029. doi: 10.1029/2006GB002835
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Townsend-Small, A., M. McCarthy, J. Brandes, L. Yang, L. Zhang, and W. Gardner. 2007. Stable isotopic composition of nitrate in Lake Taihu, China, and major inflow rivers. Hydrobiologia 581(1): 135-140. doi: 10.1007/s10750-006-0505-5
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Troedsson, C., M. E. Frischer, J. C. Nejstgaard, and E. M. Thompson. 2007. Molecular quantification of differential ingestion and particle trapping rates by the appendicularian Oikopleura dioica as a function of prey size and shape. Limnology and Oceanography 52(1): 416-427. doi: 10.4319/lo.2007.52.1.0416
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Turich, C. H., K. H. Freeman, M. A. Bruns, M. Conte, A. D. Jones, and S. G. Wakeham. 2007. Lipids of marine Archaea: Patterns and provenance in the water-column and sediments. Geochimica et Cosmochimica Acta 71(13): 3272-3291. doi: 10.1016/j.gca.2007.04.013
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van Rijssel, M., A -C. Alderkamp, J. Nejstgaard, A. Sazhin, and P. Verity. 2007. Haemolytic activity of live Phaeocystis pouchetiiduring mesocosm blooms. Biogeochemistry 83(1-3): 189-200. doi: 10.1007/s10533-007-9095-1
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Verity, P. G., C. P. Brussaard, J. C. Nejstgaard, M. A. van Leeuwe, C. Lancelot, and L. K. Medlin. 2007. Current understanding of Phaeocystis ecology and biogeochemistry, and perspectives for future research. Biogeochemistry 83(1-3): 311-330. doi: 10.1007/s10533-007-9090-6
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Verity, P. G., M. J. Zirbel, J. C. Nejstgaard. 2007. Formation of very young colonies by Phaeocystis pouchetii from western Norway. Aquatic Microbial Ecology 47(3): 267-274. doi: 10.3354/ame047267
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Verity, P.G., S.J. Whipple, J.C. Nejstgaard, A.-C.Alderkamp. 2007. Colony size, cell number, carbon and nitrogen contents of Phaeocystis pouchetii from western Norway. Journal of Plankton Research 29(4): 359-367. doi: 10.1093/plankt/fbm021
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Wakeham, S.G., R. Amann, K. H. Freeman, E. C. Hopmans, B. B. Jørgensen, I. F. Putnam, S. Schouten, J. S. Sinninghe Damsté, H. M. Talbot, and D. Woebken. 2007. Microbial ecology of the stratified water column of the Black Sea as revealed by a comprehensive biomarker study. Organic Geochemistry 38(12): 2070-2097. doi: 10.1016/j.orggeochem.2007.08.003
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Walsh, J. P., C. R. Alexander, T. Gerber, A. R. Orpin, and B. W. Sumners. 2007. Demise of a submarine canyon? Evidence for highstand infilling on the Waipaoa River continental margin, New Zealand. Geophysical Research Letters 34(20): L20606. doi: 10.1029/2007GL031142
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Webster, J. W., G. A. Brook, L. B. Railsback, H. Cheng, R. L. Edwards, C. R. Alexander and P. P. Reeder. 2007. Stalagmite evidence from Belize indicating significant droughts at the time of Preclassic Abandonment, the Maya Hiatus, and the Classic Maya collapse. Palaeogeography, Palaeoclimatology, Palaeoecology 250(1-4): 1-17. doi: 10.1016/j.palaeo.2007.02.022
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Wheatcroft, R. A., P. L. Wiberg, C. R. Alexander, S. J. Bentley, D. E. Drake, C. K. Harris, and A. S. Ogston. 2007. Post-depositional alteration and preservation of sedimentary strata. In Continental-Margin Sedimentation: from Sediment Transport to Sequence Stratigraphy, eds. C. A. Nittrouer, J. A. Austin, Jr., M. E. Field, J. H. Kravitz, J. P. M. Syvitski, and P. L. Wiberg, 101-155. IAS Special Publication 37: 608. Oxford: Blackwell Publishing, Ltd. doi: 10.1002/9781444304398.ch3
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Whipple, S. J., B. C. Patten, P. G. Verity, M. E. Frischer, J. D. Long, J. C. Nejstgaard, J. T. Anderson, A. Jacobsen, A. Larsen, J. Martinez-Martinez, and S. R. Borrett. 2007. Gaining integrated understanding of Phaeocystis spp. (Prymnesiophyceae) through model-driven laboratory and mesocosm studies. Biogeochemistry 83(1-3): 293-309. doi: 10.1007/s10533-007-9089-z
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Windom, H. L., W. Moore, and F. Niencheski. 2007. Influence of groundwater discharge through a coastal sandy barrier in southern Brazil on sea water metal chemistry. In A new focus on groundwater-seawater interaction, eds. W. Sanford, C. Langerin. M. Polemio, and P. Povinea, 180-188. IAH International Commission on Groundwater, General Assembly, IUGG, Perugia, Italy, July 2007. IAHS Publication, 0144-7815; Publication 312.
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2006
Alderkamp, A.-C., J. C. Nejstgaard, P. G. Verity, M. J. Zirbel, A. F. Sazhin, and M. van Rijssel. 2006. Dynamics in carbohydrate composition of Phaeocystis pouchetii colonies during spring blooms in mesocosms. Journal of Sea Research 55(3): 169-181. doi: 10.1016/j.seares.2005.10.005
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Bianchi, T. S., M. A. Allison, E. A. Canuel, D. R. Corbett, B. A. McKee, T. P. Sampere, S. G. Wakeham and E. Waterson. 2006. Rapid export of organic matter to the Mississippi Canyon. EOS Transactions 87(50): 565, 572-573. doi: 10.1029/2006EO500002
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Blanton, J. O., F. Andrade, and M. A. Ferreira. 2006. The relationship of hydrodynamics to morphology in tidal creek and salt marsh systems of South Carolina and Georgia. In Changing land use patterns in the coastal zone, ed. G. S.Kleppel, M. R. DeVoe, and M. V. Rawson, 93-107. New York: Springer Series on Environmental Management, Springer-Verlag. doi: 10.1007/0-387-29023-0_5
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Buck, C. S., W. M. Landing, J. A. Resing, and G. T. Lebon. 2006. Aerosol iron and aluminum solubility in the northwest Pacific Ocean: Results from the 2002 IOC cruise. Geochemistry Geophysics Geosystems 7, Q04M07. doi: 10.1029/2005GC000977
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Coolen, M. J. L., A. Boere, B. Abbas, M. Baas, S. G. Wakeham, and J. S. Sinninghe Damsté. 2006. Ancient DNA derived from alkenone-biosynthesizing haptophytes and other algae in Holocene sediments from the Black Sea. Paleoceanography 21(1): PA1005. doi: 10.1029/2005PA001188
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Devol, A. H., A. G. Uhlenhopp, S. W. A. Naqvi, J. A. Brandes, D. A. Jayakumar, H. Naik, S. Gaurin, L. A. Codispoti, and T. Yoshinari. 2006. Denitrification rates and excess nitrogen gas concentrations in the Arabian Sea oxygen deficient zone. Deep Sea Research Part I: Oceanographic Research Papers 53(9): 1533-1547. doi: 10.1016/j.dsr.2006.07.005
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Dickens, A. F., J. A. Baldock, R. J. Smernik, S. G. Wakeham, T. S. Arnarson, Y. Gélinas, and J. I. Hedges. 2006. Solid-state 13C NMR analysis of size and density fractions of marine sediments: Insight into organic carbon sources and preservation mechanisms. Geochimica et Cosmochimica Acta 70(3): 666-686. doi: 10.1016/j.gca.2005.10.024
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Frischer, M. E. 2006. SkIO scientists solve a mystery. What’s eating the blue crab. The Skinnie 4(15): 35-36.
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Frischer, M. E., and P. G. Verity. 2006. Alternatives to coliform bacteria as indicators of human impact on coastal ecosystems. In Changing land use patterns in the coastal zone, ed. G. S. Kleppel, M. R. DeVoe, and M. V. Rawson, 253-284. New York: Springer Series on Environmental Management, Springer Verlag. doi: 10.1007/0-387-29023-0_11
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Frischer, M. E., R. F. Lee, M. A. Sheppard, A. Mauer, F. Rambow, M. Neumann, J. E. Brofft, T. Wizenmann, and J. M. Danforth. 2006. Evidence for a free-living life stage of the blue crab parasitic dinoflagelate, Hematodinium sp. Harmful Algae 5(5): 548-557. doi: 10.1016/j.hal.2005.11.002
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Haberstroh, P. R., J. A. Brandes, Y. Gélinas, A. F. Dickens, S. Wirick, and G. Cody. 2006. Chemical composition of the graphitic black carbon fraction in riverine and marine sediments at sub-micron scales using carbon X-ray spectromicroscopy. Geochimica et Cosmochimica Acta 70(6): 1483-1494. doi: 10.1016/j.gca.2005.12.001
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Kitidis. V., A. P. Stubbins, G. Uher, R. C. Upstill Goddard, C. S. Law, and E. M. S. Woodward. 2006. Variability of chromophoric organic matter in surface waters of the Atlantic Ocean. Deep Sea Research Part II: Topical Studies in Oceanography 53(14-16): 1666-1684. doi: 10.1016/j.dsr2.2006.05.009
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Lee, R. F., and K. A. Maruya. 2006. Chemical contaminants entering estuaries in the South Atlantic Bight as a result of current and past land use. In Changing land use patterns in the coastal zone, ed. G.S. Keppel, M. R. DeVoe and M. V. Rawson, 205-227. New York: Springer Series on Environmental Management, Springer Verlag. doi: 10.1007/0-387-29023-0_9
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Lin, X., S. G. Wakeham, I. F. Putnam, Y. M. Astor, M. I. Scranton, A. Y. Chistoserdov, and G. T. Taylor. 2006. Comparison of vertical distributions of prokaryotic assemblages in the anoxic Cariaco Basin and Black Sea by use of fluorescence in situ hybridization. Applied and Environmental Microbiology 72(4): 2679-2690. doi: 10.1128/AEM.72.4.2679-2690.2006
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Liu, Z., C. Lee, and S. G. Wakeham. 2006. Effects of mercuric chloride and protease inhibitors on degradation of particulate organic matter from the diatom Thalassiosira pseudonana. Organic Geochemistry 37(9): 1003-1018. doi: 10.1016/j.orggeochem.2006.05.013
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Moore, W. S., J. O. Blanton, and S. B. Joye. 2006. Estimates of flushing times, submarine groundwater discharge, and nutrient fluxes to Okatee Estuary, South Carolina. Journal of Geophysical Research 111(C9): C09006. doi: 10.1029/2005JC003041
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Muri, G., S. G. Wakeham, and N. L. Rose. 2006. Records of atmospheric delivery of pyrolysis-derived pollutants in recent mountain lake sediments of the Julian Alps (NW Slovenia). Environmental Pollution 139(3): 461-468. doi: 10.1016/j.envpol.2005.06.002
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Nejstgaard, J. C., M. E. Frischer, P. G. Verity, J. T. Anderson, A. Jacobsen, M. J. Zirbel, A. Larsen, J. Martinez-Martinez, A. F. Sazhin, T. Walters, D. A. Bronk, S. J. Whipple, S. R. Borrett, B. C. Patten, and J. D. Long. 2006. Plankton development and trophic transfer in seawater enclosures with nutrients and Phaeocystis pouchetii added. Marine Ecology Progress Series 321: 99-121. doi: 10.3354/meps321099
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Orpin, A. R., C. Alexander, L. Carter, S. Kuehl, and J. P. Walsh. 2006. Temporal and spatial complexity in post-glacial sedimentation on the tectonically active, Poverty Bay continental margin of New Zealand. Continental Shelf Research 26 (17-18): 2205-2224. doi: 10.1016/j.csr.2006.07.029
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Paffenhöfer, G. -A. 2006. Oxygen consumption in relation to motion of marine planktonic copepods. Marine Ecology Progress Series 317: 187-192. doi: 10.3354/meps317187
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Paffenhöfer, G. -A., M.G. Mazzocchi and M.W. Tzeng. 2006. Living on the edge: feeding of subtropical open ocean copepods. Marine Ecology 27(2): 99-108. doi: 10.1111/j.1439-0485.2006.00086.x
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Schubert, C. J., M. J. L. Coolen, L. N. Neretin, A. Schippers, B. Abbas, E. Durisch-Kaiser, B. Wehrli, E. C. Hopmans, J. S. Sinninghe Damsté, S. Wakeham, and M. M. M. Kuypers. 2006. Aerobic and anaerobic methanotrophs in the Black Sea water column. Environmental Microbiology 8(10): 1844-1856. doi: 10.1111/j.1462-2920.2006.01079.x
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Seim, H. E., J. O. Blanton, and S. Elston. 2006. Tidal circulation and energy dissipation in a shallow, sinuous estuary. Ocean Dynamics 56(3-4): 360-375. doi: 10.1007/s10236-006-0078-x
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Stubbins, A., G. Uher, C. S. Law, K. Mopper, C. Robinson, and R. C. Upstill-Goddard. 2006. Open-ocean carbon monoxide photoproduction. Deep Sea Research Part II: Topical Studies in Oceanography 53(14-16): 1695-1705. doi: 10.1016/j.dsr2.2006.05.011
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Stubbins, A., G. Uher, V. Kitidis, C. S. Law, R. C. Upstill-Goddard, and E. M. S Woodward. 2006. The open-ocean source of atmospheric carbon monoxide. Deep Sea Research Part II: Topical Studies in Oceanography 53(14-16): 1685-1694. doi: 10.1016/j.dsr2.2006.05.010
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Troedsson, C., M. E. Frischer, J. C. Nejstgaard, and E. M. Thompson. 2006. Molecular quantification of differential ingestion and particle trapping rates by the appendicularian Oikopleura dioica as a function of prey size and shape. Limnology and Oceanography 52(1): 416-427. doi: 10.4319/lo.2007.52.1.0416
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Troedsson, C., R. F. Lee, V. Stokes, T. L. Walters, P. Simonelli, and M. E. Frischer. 2006. Development of a denaturing high-performance liquid chromatography method for detection of protist parasites of metazoans. Applied and Environmental Microbiology 74(14): 4336-4345. doi: 10.1128/AEM.02131-07
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Wakeham, S. G. , A. P. McNichol, J. E. Kostka, and T. K. Pease. 2006. Natural-abundance radiocarbon as a tracer of assimilation of petroleum carbon by bacteria in salt marsh sediments. Geochimica et Cosmochimica Acta 70(7): 1761-1771. doi: 10.1016/j.gca.2005.12.020
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Wakeham, S. G., and E. A. Canuel. 2006. Degradation and preservation of organic matter in marine sediments. In Marine organic matter: Biomarkers, isotopes and DNA, Vol. 2N, Reactions and processes, ed. J. K. Volkman, 295-321. Berlin: The Handbook of Environmental Chemistry Series, Springer-Verlag. doi: 10.1007/698_2_009
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Windom, H., W. S. Moore, L. F. Niencheski, and R. Jahnke. 2006. Submarine groundwater discharge: A large, previously unrecognized source of dissolved iron to the South Atlantic Ocean. Marine Chemistry 102(3-4): 252-266. doi: 10.1016/j.marchem.2006.06.016
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Wuchter, C., S. Schouten, S. G. Wakeham, and J. S. Sinninghe Damsté. 2006. Archaeal tetraether membrane lipid fluxes in the northeastern Pacific and the Arabian Sea: Implications for TEX86 paleothermometry. Paleoceanography 21(4): PA4208. doi: 10.1029/2006PA001279
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2005
Alexander, C. R., R. F. Lee, D. T. Burton, and L. W. Hall Jr. 2005. An integrated case study for evaluating the impacts of an oil refinery effluent on aquatic biota in the Delaware River: Sediment core studies. Human and Ecological Risk Assessment: An International Journal 11(4): 861-877. doi: 10.1080/10807030591009034
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Allen, A. E., M. G. Booth, P. G. Verity, and M. E. Frischer. 2005. Influence of nitrate availability on the distribution and abundance of heterotrophic bacterial nitrate assimilation genes in the Barents Sea during summer. Aquatic Microbial Ecology 39(3): 247-255. doi: 10.3354/ame039247
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Arnold, W. S., G. L. Hitchcock, M. E. Frischer, R. Wanninkhof, and Y. P. Sheng. 2005. Dispersal of an introduced larval cohort in a coastal lagoon. Limnology and Oceanography 50(2): 587-597. doi: 10.4319/lo.2005.50.2.0587
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Engel, A., I. Zondervan, K. Aerts, L. Beaufort, A. Benthien, L. Chou, B. Delille, J.-P. Gattuso, J. Harlay, C. Heemann, L. Hoffmann, S. Jacquet, J. Nejstgaard, M.-D. Pizay, E. Rochelle-Newall, U. Schneider, A. Terbrueggen, and U. Riebesell. 2005. Testing the direct effect of CO2 concentration on a bloom of the coccolithophorid Emiliania huxleyi in mesocosm experiments. Limnology and Oceanography 50(2): 493-507. doi: 10.4319/lo.2005.50.2.0493
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Frischer, M. E., B. R. McGrath, A. S. Hansen, P. A. Vescio, J. A. Wyllie, J. Wimbush, and S. A. Nierzwicki-Bauer. 2005. Introduction pathways, differential survival of adult and larval zebra mussels (Dreissena polymorpha), and possible management strategies, in an Adirondack lake, Lake George, NY. Lake and Reservoir Management 21(4): 391-402. doi: 10.1080/07438140509354444
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Frischer, M. E., J. M. Danforth, T. F. Foy, and R. Juraske. 2005. Bioluminescent bacteria as indicators of chemical contamination of coastal waters. Journal of Environmental Quality 34(4): 1328-1336. doi: doi:10.2134/jeq2004.0245
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Frischer, M. E., and M. Sullivan. 2005. Marsh Grass Making a Comeback. The Landings Journal. Savannah, GA. September 2005: 1, cont. on page 8.
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Gulick, S. P. S., J. A. Goff, J. A. Austin, C. R. Alexander, S. Nordfjord, and C. S. Fulthorpe. 2005. Basal inflection-controlled shelf-edge wedges off New Jersey track sea-level fall. Geology 33(5): 429-432.
Jahnke, R., M. Richards, J. Nelson, C. Robertson, A. Rao, and D. Jahnke. 2005. Organic matter remineralization and porewater exchange rates in permeable South Atlantic Bight continental shelf sediments. Continental Shelf Research 25(12-13): 1433-1452. doi: 10.1016/j.csr.2005.04.002
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Jahnke, R. A. 2005. Transport processes and organic matter cycling in coastal sediments. In The sea, Vol. 13, The global coastal ocean: Multiscale interdisciplinary processes, ed. A. R. Robinson, and K. H. Brink, 163-191. Boston: Harvard University Press.
Kendall, M. S., O. P. Jensen, C. R. Alexander, D. Field, G. McFall, R. Bohne, and M. E. Monaco. 2005. Benthic mapping using sonar, video transects, and an innovative approach to accuracy assessment: A characterization of bottom features in the Georgia Bight. Journal of Coastal Research 21(6): 1154-1165. Stable URL: http://www.jstor.org/stable/4299522
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Larsen, J. B., M. E. Frischer, L. J. Rasmussen, and B. W. Hansen. 2005. Single-step nested multiplex PCR to differentiate between various bivalve larvae. Marine Biology 146(6): 1119-1129. doi: 10.1007/s00227-004-1524-2
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Paffenhöfer G. -A., A. Ianora, A. Miralto, J. T. Turner, G. S. Kleppel, M. R. d’Alcalà, R. Casotti, G. S. Caldwell, G. Pohnert, A. Fontana, D. Müller-Navarra, S. Jónasdóttir, V. Armbrust, U. Båmstedt, S. Ban, M. G. Bentley, M. Boersma, M. Bundy, I. Buttino, A. Calbet, F. Carlotti, Y. Carotenuto, G. d’Ippolito, B. Frost, C. Guisande, W. Lampert, R. F. Lee, S. Mazza, M. G. Mazzocchi, J. C. Nejstgaard, S. A. Poulet, G. Romano, V. Smetacek, S. Uye, S. Wakeham, S. Watson, and T. Wichard. 2005. Colloquium on diatom-copepod interactions. Marine Ecology Progress Series 286:293-305. doi: 10.3354/meps286293
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Peterson, M. L., S. G. Wakeham, C. Lee, M. A. Askea, and J. C. Miquel. 2005. Novel techniques for collection of sinking particles in the ocean and determining their settling rates. Limnology and Oceanography: Methods 3(12): 520-532. doi: 10.4319/lom.2005.3.520
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Queiroga, H., and J. Blanton. 2005. Interactions between behaviour and physical forcing in the control of horizontal transport of decapod crustacean larvae. Advances in Marine Biology 47:107-214. doi: 10.1016/S0065-2881(04)47002-3
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Savidge, W. B., and N. E. Blair. 2005. Intramolecular carbon isotopic composition of monosodium glutamate: Biochemical pathways and product source identification. Journal of Agricultural and Food Chemistry 53(2): 197-201. doi: 10.1021/jf040200k
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Townsend-Small, A., M. E. McClain, and J. A. Brandes. 2005. Contributions of carbon and nitrogen from the Andes Mountains to the Amazon River: Evidence from an elevational gradient of soils, plants, and river material. Limnology and Oceanography 50(3): 672-685. doi: 10.4319/lo.2005.50.2.0672
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Wuchter, C., S. Schouten, S. G. Wakeham, and J. S. Sinninghe Damsté. 2005. Temporal and spatial variation in tetraether membrane lipids of marine Crenarchaeota in particulate organic matter: Implications for TEX86 paleothermometry. Paleoceanography 20(3): PA3013. doi: 10.1029/2004PA001110
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2004
Aksnes, D. L., J. Nejstgaard, E. Sædberg, and T. Sørnes. 2004. Optical control of fish and zooplankton populations. Limnology and Oceanography 49(1): 233-238. doi: 10.4319/lo.2004.49.1.0233
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Armstrong, E., J. Granger, E. L. Mann, and N. M. Price. 2004. Outer membrane siderophore receptors of heterotrophic oceanic bacteria. Limnology and Oceanography 49(2): 579-587. doi: 10.4319/lo.2004.49.2.0579
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Benner, R. H. , C. Lee and S. G. Wakeham, eds. 2004. Symposium on new approaches in marine organic biogeochemistry: A tribute to the life and science of John I. Hedges. Marine Chemistry 92(1-4): 1-3. doi: 10.1016/j.marchem.2004.06.013
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Brandes, J. A., C. Lee, S. Wakeham, M. Peterson, C. Jacobsen, S. Wirick, and G. Cody. 2004. Examining marine particulate organic matter at sub-micron scales using scanning transmission X-ray microscopy and carbon X-ray absorption near edge structure spectroscopy. Marine Chemistry 92(1-4): 107-121. doi: 10.1016/j.marchem.2004.06.020
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Cody, G. D., N. Z. Boctor, J. A. Brandes, T. R. Filley, R. M. Hazen and H. S. Yoder Jr. 2004. Assaying the catalytic potential of transition metal sulfides for abiotic carbon fixation. Geochimica et Cosmochimica Acta 68(10): 2185–2196. doi: 10.1016/j.gca.2003.11.020
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Dickens, A. F., Y. Gélinas, C. A. Masiello, S. Wakeham and J. I. Hedges. 2004. Reburial of fossil organic carbon in marine sediments. Nature 427(6972): 336-339. doi: 10.1038/nature02299
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Furukawa, Y., A. C. Smith, J. E. Kostka, J. Watkins, and C. R. Alexander. 2004. Quantification of macrobenthic effects on diagenesis using a multicomponent inverse model in salt marsh sediments. Limnology and Oceanography 49(6): 2058-2072. doi: 10.4319/lo.2004.49.6.2058
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Ingalls, A. E., R. C. Aller, C. Lee, and S. G. Wakeham. 2004. Organic matter diagenesis in shallow water carbonate sediments. Geochimica et Cosmochimica Acta 68(21): 4363-4379. doi: 10.1016/j.gca.2004.01.002
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Jahnke, R. A., and D. B. Jahnke. 2004. Calcium carbonate dissolution in deep sea sediments: reconciling microelectrode, pore water and benthic flux chamber results. Geochimica et Cosmochimica Acta 68(1): 47-59. doi: 10.1016/S0016-7037(03)00260-6
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Jiang, H., and G. -A. Paffenhöfer. 2004. Relation of behavior of copepod juveniles to potential predation by omnivorous copepods: An empirical-modeling study. Marine Ecology Progress Series 278:225-239. doi: 10.3354/meps278225
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Lee, C., S. G. Wakeham, and C. Arnosti. 2004. Particulate organic matter in the sea: the composition conundrum. Ambio 33:565-575. Stable URL: http://www.jstor.org/stable/4315547
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Lee, R. F., and M. E. Frischer. 2004. The decline of the blue crab: Changing weather patterns and a suffocating parasite may have reduced the numbers of this species along the Eastern seaboard. American Scientist 92(6): 548-553. Stable URL: http://www.jstor.org/stable/27858483
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Lee, R. F., M. E. Frischer, and A. Walker. 2004. Drought associated epidemic of a blue crab disease in coastal Georgia USA. In Proceedings of International Symposium on Long-term Variations in the Coastal Environments and Ecosystems 27-28 September 2004. Matsuyama, Japan.
Massé, G., S. T. Belt, W. G. Allard, C. A. Lewis, S. G. Wakeham, and S. J. Rowland. 2004. Occurrence of novel monocyclic alkenes from diatoms in marine particulate matter and sediments. Organic Geochemistry 35(7): 813-822. doi: 10.1016/j.orggeochem.2004.03.004
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Muri, G., S. G. Wakeham, T. K. Pease, and J. Faganeli. 2004. Evaluation of lipid biomarkers as indicators of changes in organic matter delivery to sediments from Lake Planina, a remote mountain lake in NW Slovenia. Organic Geochemistry 35(10): 1083-1093. doi: 10.1016/j.orggeochem.2004.06.004
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Savidge, D. K. 2004. Gulf Stream meander propagation past Cape Hatteras. Journal of Physical Oceanography 34(9): 2073-2085. doi: 10.1175/1520-0485(2004)034<2073:GSMPPC>2.0.CO;2
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Savidge, W. B., and N. E. Blair. 2004. Patterns of intramolecular carbon isotopic heterogeneity within amino acids of autotrophs and heterotrophs. Oecologia 139(2): 178-189. doi: 10.1007/s00442-004-1500-z
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Savidge, W. B., and N. E. Blair. 2004. Seasonal and within-plant gradients in the intramolecular carbon isotopic composition of amino acids of Spartina alterniflora. Journal of Experimental Marine Biology and Ecology 308(2): 151-167. doi: 10.1016/j.jembe.2004.02.010
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Sharp, J. H., A. Y. Beauregard, D. Burdige, G. Cauwet, S. Curless, R. Lauck, K. Nagel, H. Ogawa, A. E. Parker, O. Primm, M. Pujo-Pay, W. B. Savidge, S. Seitzinger, G. Spyres, and R. Styles. 2004. A direct instrument comparison for measurement of total dissolved nitrogen in seawater. Marine Chemistry 84(3-4): 181-193. doi: 10.1016/j.marchem.2003.07.003
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Wakeham, S. G. 2004. Reading the molecular Rosetta Stone: molecular clues on the origin and diagenesis of organic matter. Marine Chemistry 92(1-4): 235-237. doi: 10.1016/j.marchem.2004.06.028
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Wakeham, S. G., E. C. Hopmans, S. Schouten, and J. S. Sinninghe Damsté. 2004. Archaeal lipids and anaerobic oxidation of methane in euxinic water columns: a comparative study of the Black Sea and Cariaco Basin. Chemical Geology 205(3-4): 427-442. doi: 10.1016/j.chemgeo.2003.12.024
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Wakeham, S. G., J. Forrest, C. A. Masiello, Y. Gélinas, C. R. Alexander, and P. R. Leavitt. 2004. Hydrocarbons in Lake Washington sediments: A 25-year retrospective in an urban lake. Environmental Science and Technology 38(2): 431-439. doi: 10.1021/es0343149
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2003
Alexander, C. R., and C. Venherm. 2003. Modern sedimentary processes in the Santa Monica, California continental margin: sediment accumulation, mixing and budget. Marine Environmental Research 56(1-2): 177-204. doi: 10.1016/S0141-1136(02)00330-6
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Allard, R. A., C. A. Blain, L. F. Smedstad, T. Keen, A. J. Wallcraft, C. N. Barren, J. D. Dykes, C. R. Edwards, B. D. Estrade, M. Bettencourt, G. Peggion, S. Howington, J. M. Smith, W. E. McBride, and R. P. Signell. 2003. High fidelity simulation of littoral environments: applications and coupling of participating models. In 2003 Users Group Conference: Proceedings: June 9 to 13, 2003, Bellevue, WA, 306-313. Los Alamitos, Ca: IEEE Computer Society. doi: 10.1109/DODUGC.2003.1253408
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Blanton, J., H. Seim, C. Alexander, J. Amft, and G. Kineke. 2003. Transport of salt and suspended sediments in a curving channel of a coastal plain estuary: Satilla River, GA. Estuarine, Coastal and Shelf Science 57(5-6): 993-1006. doi: 10.1016/S0272-7714(03)00005-2
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D’Elia, C. F., W. R. Boynton, and J. G. Sanders. 2003. A watershed perspective on nutrient enrichment, science, and policy in the Patuxent River, Maryland: 1960-2000. Estuaries 26(2): 171-185. Stable URL: http://www.jstor.org/stable/1353118
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Edwards, C. R., P. Hwang, and C. A. Blain. 2003. Application of non-stationary time series analysis techniques to Mississippi Sound data. Journal of the Mississippi Academy of Sciences 48(1): 62-63.
Haberer, J. L., and J. A. Brandes. 2003. A high sensitivity, low volume HPLC based method to determine soluble reactive phosphate (SRP) in freshwater and saltwater. Marine Chemistry 82 (3-4): 185-196. doi: 10.1016/S0304-4203(03)00069-0
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Helland, S., J. C. Nejstgaard, H. J. Fyhn, J. K. Egge, and U. Båmstedt. 2003. Effects of starvation, season, and diet on the free amino acid and protein content of Calanus finmarchicus females. Marine Biology 143(2): 297-306. doi: 10.1007/s00227-003-1092-x
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Helland, S., J. C. Nejstgaard, R. Humlen, H. J. Fyhn, and U. Båmstedt. 2003. Effects of season and maternal food on Calanus finmarchicus reproduction, with emphasis on free amino acids. Marine Biology 142(6): 1141-1151. doi: 10.1007/s00227-003-1045-4
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Ingalls, A. E., C. Lee, S. G. Wakeham, and J. I. Hedges. 2003. The role of biominerals in the sinking flux and preservation of amino acids in the Southern Ocean along 170ºW. Deep Sea Research Part II: Topical Studies in Oceanography 50(3-4): 713-738. doi: 10.1016/S0967-0645(02)00592-1
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Jahnke, R. A., C. R. Alexander, and J. E. Kostka. 2003. Advective pore water input of nutrients to the Satilla River Estuary, Georgia, USA. Estuarine, Coastal and Shelf Science 56(3-4): 641-653. doi: 10.1016/S0272-7714(02)00216-0
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Langley, S, K., C. R. Alexander, D. M. Bush, and C. W. Jackson. 2003. Modernizing shoreline change analysis in Georgia using topographic survey sheets in a GIS environment. Journal of Coastal Research, Special Issue No. 38, Shoreline Mapping and Change Analysis: Technical Considerations and Management Implications, pp. 168-177. Stable URL: http://www.jstor.org/stable/25736605
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Lee, R. F., and S. Steinert. 2003. Use of the single cell gel electrophoresis/comet assay for detecting DNA damage in aquatic (marine and freshwater) animals. Mutation Research/Reviews in Mutation Research 544(1): 43-64. doi: 10.1016/S1383-5742(03)00017-6
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Martinez, J. S., J. N. Carter-Franklin, E. L. Mann, J. D. Martin, M. G. Haygood, and A. Butler. 2003. Structure and membrane affinity of a suite of amphiphilic siderophores produced by a marine bacterium. Proceedings of the National Academy of Sciences 100(7): 3754-3759. doi: 10.1073/pnas.0637444100
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Minor, E. C., S. G. Wakeham, and C. Lee. 2003. Changes in the molecular-level characteristics of sinking marine particles with water column depth. Geochimica et Cosmochimica Acta 67(22): 4277-4288. doi: 10.1016/S0016-7037(03)00263-1
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Muri, G., S. G. Wakeham, and J. Faganeli. 2003. Polycyclic aromatic hydrocarbons and black carbon in sediments of a remote alpine lake (Lake Planina, northwest Slovenia). Environmental Toxicology and Chemistry 22(5): 1009-1016. doi: 10.1002/etc.5620220508
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Nejstgaard, J. C., M. E. Frischer, C. L. Raule, T. Gruebel, K. E. Kohlberg, and P. G. Verity. 2003. Molecular detection of algal prey in copepod guts and fecal pellets. Limnology and Oceanography: Methods 1(1): 29-38. doi: 10.4319/lom.2003.1.29
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Riedel, G. F., and J. G. Sanders. 2003. The interrelationships among trace element cycling, nutrient loading, and system complexity in estuaries: A mesocosm study. Estuaries 26 (2A): 339-351. Stable URL: http://www.jstor.org/stable/1353130
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Riedel, G. F., J. G. Sanders, and D. L. Breitburg. 2003. Seasonal variability in response of estuarine phytoplankton communities to stress: Linkages between toxic trace elements and nutrient enrichment. Estuaries 26(2A): 323-338. Stable URL: http://www.jstor.org/stable/1353129
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Rubin, S. I., S. L. King, R. A. Jahnke, and P. N. Froelich. 2003. Benthic barium and alkalinity fluxes: Is Ba an oceanic paleo-alkalinity proxy for glacial atmospheric CO2? Geophysical Research Letters 30(17): 1885. doi: 10.1029/2003GL017339
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Schouten, S., S. G. Wakeham, E. C. Hopmans, and J. S. Sinninghe Damsté. 2003. Biogeochemical evidence that thermophilic archaea mediate the anaerobic oxidation of methane. Applied and Environmental Microbiology 69(3): 1680-1686. doi: 10.1128/AEM.69.3.1680-1686.2003
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Sheppard, M., A. Walker, M. E. Frischer, and R. F. Lee. 2003. Histopathology and prevalence of the parasitic dinoflagellate, Hematodinium sp., in crabs (Callinectes sapidus, Callinectes similis, Neopanope sayi, Libinia emarginata, Menippe mercenaria) from a Georgia estuary. Journal of Shellfish Research 22(3): 873-880. Stable URL: https://biodiversitylibrary.org/page/3105791
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Sigman, D. M., R. Robinson, A. N. Knapp, A. van Geen, D. C. McCorkle, J. A. Brandes, and R. C. Thunell. 2003. Distinguishing between water column and sedimentary denitrification in the Santa Barbara Basin using the stable isotopes of nitrate. Geochemistry Geophysics Geosystems 4(5): 1040. doi: 10.1029/2002GC000384
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Svensen, C., and J. C. Nejstgaard. 2003. Is sedimentation of copepod faecal pellets determined by cyclopoids? Evidence from enclosed ecosystems. Journal of Plankton Research 25(8): 917-926. doi: 10.1093/plankt/25.8.917
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Wakeham, S. G., C. M. Lewis, E. C. Hopmans, S. Schouten, and J. S. Sinninghe Damsté. 2003. Archaea mediate anaerobic oxidation of methane in deep euxinic waters of the Black Sea. Geochimica et Cosmochimica Acta 67(7): 1359-1374. doi: 10.1016/S0016-7037(02)01220-6
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Wakeham, S. G., T. K. Pease, and R. Benner. 2003. Hydroxy fatty acids in marine dissolved organic matter as indicators of bacterial membrane material. Organic Geochemistry 34(6): 857-868. doi: 10.1016/S0146-6380(02)00189-4
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Windom, H., and F. Niencheski. 2003. Biogeochemical processes in a freshwater–seawater mixing zone in permeable sediments along the coast of Southern Brazil. Marine Chemistry 83(3-4):121-130. doi: 10.1016/S0304-4203(03)00106-3
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2002
Allen, A. E, M. H. Howard-Jones, M. G. Booth, M. E. Frischer, P. G. Verity, D. A. Bronk, and M. P. Sanderson. 2002. Importance of heterotrophic bacterial assimilation of ammonium and nitrate in the Barents Sea during summer. Journal of Marine Systems 38(1-2): 93-108. doi: 10.1016/S0924-7963(02)00171-9
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Armstrong, R. A., C. Lee, J. I. Hedges, S. Honjo, and S. G. Wakeham. 2002. A new, mechanistic model for organic carbon fluxes in the ocean based on the quantitative association of POC with ballast minerals. Deep Sea Research Part II: Topical Studies in Oceanography 49(1-3): 219-236. doi: 10.1016/S0967-0645(01)00101-1
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Arnold, W. S., D. C. Marelli, M. Parker, P. Hoffman, M. Frischer, and J. Scarpa. 2002. Enhancing hard clam (Mercenaria spp.) population density in the Indian River Lagoon, Florida: a comparison of strategies to maintain the commercial fishery. Journal of Shellfish Research 21:659-672.
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Blain, C. A., and C. R. Edwards. 2002. Development of a forecast capability for coastal embayments of the Mississippi Sound. In Proceedings Marine Technology Society/Oceans 3:1501-1508.
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Blanton, J. O., G. Lin, and S. A. Elston. 2002. Tidal current asymmetry in shallow estuaries and tidal creeks. Continental Shelf Research 22(11-13):1731-1743. doi: 10.1016/S0278-4343(02)00035-3
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Brandes, J. A., and A. H. Devol. 2002. A global marine-fixed nitrogen isotopic budget: Implications for Holocene nitrogen cycling. Global Biogeochemical Cycles 16(4): 1120. doi: 10.1029/2001GB001856
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Cruickshank, J. 2002. The role of scientific literature in electronic scholarly communication. Science and Technology Libraries 22(3-4): 71-100. doi: 10.1300/J122v22n03_08
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Edwards, C. R., and C. A. Blain. 2002. Applications of the incremental approach to Yellow Sea modeling. In Estuarine and Coastal Modeling: Proceedings of the Seventh International Conference, ed. M. L. Spaulding, 447-466. Reston, Va: American Society of Civil Engineers.
Edwards, C. R., and C. A. Blain. 2002. Operational evaluation of ADCIRC-2DDi as applied to the Western North Atlantic Ocean. In NRL Formal Report NRL/FR/7320-0210005.
Frischer, M. E., A. S. Hansen, J. A. Wyllie, J. Wimbush, J. Murray, and S. A. Nierzwicki-Bauer. 2002. Specific amplification of the 18S rRNA gene as a method to detect zebra mussel (Dreissena polymorpha) larvae in plankton samples. Hydrobiologia 487(1): 33-44. doi: 10.1023/A:1022971918673
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Gruebl, T., M. E. Frischer, M. Sheppard, M. Neumann, A. N. Maurer, and R. F. Lee. 2002. Development of an 18S rRNA gene-targeted PCR-based diagnostic for the blue crab parasite Hematodinium sp. Diseases of Aquatic Organisms 49(1): 61-70. doi: 10.3354/dao049061
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Hazen, R. M., N. Boctor, J. A. Brandes, G. D. Cody, R. J. Hemley, A. Sharma, and H. S. Yoder, Jr.. 2002. High pressure and the origin of life. Journal of Physics: Condensed Matter 14(44): 11489-11494. doi: 10.1088/0953-8984/14/44/504
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Hedges, J. I., J. A. Baldock, Y. Gélinas, C. Lee, M. L. Peterson, and S. G. Wakeham. 2002. The biochemical and elemental compositions of marine plankton: A NMR perspective. Marine Chemistry 78(1): 47-63.
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Howard-Jones, M. H., V. D. Ballard, A. E. Allen, M. E. Frischer, and P. G. Verity. 2002. Distribution of bacterial biomass and activity in the marginal ice zone of the central Barents Sea during summer. Journal of Marine Systems 38(1-2): 77-91. doi: 10.1016/S0924-7963(02)00170-7
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Lee, R. F. 2002. Bioavailability, biotransformation and fate of organic contaminants in estuarine animals. In Coastal and Estuarine Risk Assessment, eds. M. C. Newman, M. H. Roberts, Jr. and R. C. Hale, 97-126. Boca Raton, FL: CRC/Lewis Press.
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Mann, E. L., N. Ahlgren, J. W. Moffett, and S. W. Chisholm. 2002. Copper toxicity and cyanobacteria ecology in the Sargasso Sea? Limnology and Oceanography 47(4): 976-988. doi: 10.4319/lo.2002.47.4.0976
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Marinelli, R. L., C. R. Lovell, S. G. Wakeham, D. Ringelberg, and D. C. White. 2002. Experimental investigation of the control of bacterial community composition in macrofaunal burrows. Marine Ecology Progress Series 235:1-13. doi: 10.3354/meps235001
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Niencheski, L. F., and R. A. Jahnke. 2002. Benthic respiration and inorganic nutrient fluxes in the estuarine region of Patos Lagoon (Brazil). Aquatic Geochemistry 8(3): 135-152. doi: 10.1023/A:1024207220266
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Savidge, D. K. 2002. Wintertime shoreward near-surface currents south of Cape Hatteras. Journal of Geophysical Research – Oceans 107(C11) 3205: 26-1 – 26-18. doi: 10.1029/2001JC001193
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Seim, H. E., J. O. Blanton, and T. F. Gross. 2002. Direct stress measurements in a shallow, sinuous estuary. Continental Shelf Research 22(11-13): 1565-1578. doi: 10.1016/S0278-4343(02)00029-8
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Sheridan, C. C., C. Lee, S. G. Wakeham, and J. K. B. Bishop. 2002. Suspended particle organic composition and cycling in surface and midwaters of the equatorial Pacific Ocean. Deep Sea Research Part I: Oceanographic Research Papers 49(11): 1983-2008. doi: 10.1016/S0967-0637(02)00118-8
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Sinninghe Damsté, J. S., W. I. C. Rijpstra, E. C. Hopmans, F. G. Prahl, S. G. Wakeham, and S. Schouten. 2002. Distribution of membrane lipids of planktonic crenarchaeota in the Arabian Sea. Applied and Environmental Microbiology 68(6): 2997-3002. doi: 10.1128/AEM.68.6.2997-3002.2002
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Smith, M. L., C. Alexander, and A. E. Jennings. 2002. Accumulation in east Greenland fjords and on the continental shelves adjacent to the Denmark Strait over the last century based on 210Pb geochronology. Arctic 55(2): 109-122. doi: 10.14430/arctic695
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Sun, M.-Y., R. C. Aller, C. Lee, and S. G. Wakeham. 2002. Effects of oxygen and redox oscillation on degradation of cell-associated lipids in surficial marine sediments. Geochimica et Cosmochimica Acta 66(11): 2003-2012. doi: 10.1016/S0016-7037(02)00830-X
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Svensen, C., J. C. Nejstgaard, J. K. Egge, and P. Wassmann. 2002. Pulsing versus constant supply of nutrients (N, P and Si): effect on phytoplankton, mesozooplankton and vertical flux of biogenic matter. Scientia Marina 66(3): 189-203.
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Verity, P. G., M. R. Gilligan, M. E. Frischer, M. G. Booth, J. P. Richardson, and C. Franklin. 2002. Improving undergraduate research experiences: lessons from a historically black university’s unusual collaboration. American Association for Higher Education Bulletin 54(6): 3-6.
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Verity, P. G., P. Wassmann, M. E. Frischer, M. H. Howard-Jones, and A. E. Allen. 2002. Grazing of phytoplankton by microzooplankton in the Barents Sea during early summer. Journal of Marine Systems 38(1-2): 109-123. doi: 10.1016/S0924-7963(02)00172-0
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Wakeham, S. 2002. Diagenesis of organic matter at the water-sediment interface. In Chemistry of Marine Water and Sediments, ed. A. Gianguzza, E. Pelizzetti, and S. Sammartano, 147-164. Berlin: Springer. doi: 10.1007/978-3-662-04935-8_6
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Wakeham, S. G. 2002. Paleoenvironmental reconstructions using stable carbon isotopes and organic biomarkers. In Chemistry of Marine Water and Sediments, ed. A. Gianguzza, E. Pelizzetti, and S. Sammartano, 423-443. Berlin: Springer. doi: 10.1007/978-3-662-04935-8_19
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Wakeham, S. G., M. L. Peterson, J. I. Hedges, and C. Lee. 2002. Lipid biomarker fluxes in the Arabian Sea, with a comparison to the Equatorial Pacific Ocean. Deep Sea Research Part II: Topical Studies in Oceanography 49(12): 2265-2301. doi: 10.1016/S0967-0645(02)00037-1
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2001
Allen, A. E., M. G. Booth, M. E. Frischer, P. G. Verity, J. P. Zehr, and S. Zani. 2001. Diversity and detection of nitrate assimilation genes in marine bacteria. Applied and Environmental Microbiology 67(11):5343-5348. doi: 10.1128/AEM.67.11.5343-5348.2001
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Benson, A. J., D. C. Marelli, M. E. Frischer, J. M. Danforth, and J. D. Williams. 2001. Establishment of the green mussel, Perna viridis (Linnaeus 1758), (Mollusca: Mytilidae) on the west coast of Florida. Journal of Shellfish Research 20(1): 21-29. Stable URL: https://biodiversitylibrary.org/page/2148140
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Bijma, J., M. Altabet, M. Conte, H. Kinkel, G. J. M. Versteegh, J. K. Volkman, S. G. Wakeham, and P. P. Weaver. 2001. Primary signal: Ecological and environmental factors — Report from Working Group 2. Geochemistry Geophysics Geosystems 2(1): Paper 2000GC000051, Jan. 10, 2001. doi: 10.1029/2000GC000051
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Blanton, J. O., and F. A. Andrade. 2001. Distortion of tidal currents and the lateral transfer of salt in a shallow coastal plain estuary (O Estuário do Mira, Portugal). Estuaries 24(3): 467-480. Stable URL: https://www.jstor.org/stable/1353247
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Brandes, J. A., G. D. Cody, R. M. Hazen, and H. S. Yoder, Jr. 2001. Stability and transformations of nitrogenous compounds under hydrothermal conditions. Astrobiology 1 (3): 298.
Chiarenzelli, J. R., C. Alexander, A. Isley, R. Scrudato, J. Pagano, and W. Ramirez. 2001. Polychlorinated biphenyls in nonaccumulating, century-old sediments: Sources, signatures and mechanism of introduction. Environmental Science &Technology 35(14): 2903-2908. doi: 10.1021/es010593t
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Codispoti, L. A., J. A. Brandes, J. P. Christensen, A. H. Devol, S. W. A. Naqvi, H. W. Paerl, and T. Yoshinari. 2001. The oceanic fixed nitrogen and nitrous oxide budgets: Moving targets as we enter the anthropocene? Scientia Marina 65(Suppl 2): 85-105.
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Cody, G. D., N. Z. Boctor, R. M. Hazen, J. A. Brandes, H. J. Morowitz, and H. S. Yoder, Jr. 2001. Geochemical roots of autotrophic carbon fixation: hydrothermal experiments in the system citric acid, H2O-(±FeS)-(±NiS). Geochimica et Cosmochimica Acta 65(20): 3557-3576. doi: 10.1016/S0016-7037(01)00674-3
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Conte, M. H., J. C. Weber, L. L. King, and S. G. Wakeham. 2001. The alkenone temperature signal in western North Atlantic surface waters. Geochimica et Cosmochimica Acta 65(23): 4275-4287. doi: 10.1016/S0016-7037(01)00718-9
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Cowen, J. P., M. A. Bertram, S. G. Wakeham, R. E. Thomson, J. W. Lavelle, E. T. Baker, and R. A. Feely. 2001. Ascending and descending particle flux from hydrothermal plumes at Endeavor Segment, Juan de Fuca Ridge. Deep Sea Research Part I: Oceanographic Research Papers 48(4): 1093-1120. doi: 10.1016/S0967-0637(00)00070-4
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Cruickshank, J., and D. G. Nowak. 2001. Marketing reference resources and services through a university outreach program. The Reference Librarian 35(73): 265-280. doi: 10.1300/J120v35n73_04
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Edwards, C. R., and C. A. Blain. 2001. Evaluation of an application of adjoint methods to Yellow Sea modeling. In U.S. Naval Research Laboratory Formal Report, NRL/RF/7320-019976.
Hedges, J. I., J. A. Baldock, Y. Gelinas, C. Lee, M. L. Peterson, and S. G. Wakeham. 2001. Evidence for non-selective preservation of organic matter in sinking marine particles. Nature 409:801-804. doi: 10.1038/35057247
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Hernes, P. J., M. L. Peterson, J. W. Murray, S. G. Wakeham, C. Lee, and J. I. Hedges. 2001. Particulate carbon and nitrogen fluxes and compositions in the central equatorial Pacific. Deep Sea Research Part I: Oceanographic Research Papers 48(9): 1999-2023. doi: 10.1016/S0967-0637(00)00115-1
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Howard-Jones, M. H., M. E. Frischer, and P. G. Verity. 2001. Determining the physiological status of individual bacteria cells. In Marine microbiology. Methods in Microbiology, Vol. 30, ed. J. H. Paul, 175-206. London: Academic Press
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King, J. K., J. E. Kostka, M. E. Frischer, F. M. Sanders, and R. A. Jahnke. 2001. A quantitative relationship that demonstrates mercury methylation rates in marine sediments are based on the community composition and activity of sulfate-reducing bacteria. Environmental Science and Technology 35(12): 2491-2496. doi: 10.1021/es001813q
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Laws, E. A., B. N. Popp, R. R. Bidigare, U. Reibesell, S. Burkhardt, and S. G. Wakeham. 2001. Controls on the molecular distribution and carbon isotopic composition of alkenones in certain haptophyte algae. Geochemistry Geophysics Geosystems 2(1), 1006, Paper number: 2000GC000057, Jan. 25, 2001. doi: 10.1029/2000GC000057
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Marine Zooplankton Colloquium 2 (MZC2). 2001. Future marine zooplankton research — a perspective. Marine Ecology Progress Series 222:297-308. doi: 10.3354/meps222297
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Nejstgaard, J. C., B. H. Hygum, L. -J. Naustvoll, and U. Båmstedt. 2001. Zooplankton growth, diet and reproductive success compared in simultaneous diatom- and flagellate-microzooplankton-dominated plankton blooms. Marine Ecology Progress Series 221:77-91. doi: 10.3354/meps221077
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Nejstgaard, J. C., L. -J. Naustvoll, and A. Sazhin. 2001. Correcting for underestimation of microzooplankton grazing in bottle incubation experiments with mesozooplankton. Marine Ecology Progress Series 221:59-75. doi: 10.3354/meps221059
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Rosell-Melé, A., E. Bard, K.-C. Emis, J. O. Grimalt, P. Müller, R. Schneider, I. Bouloubassi, B. Epstein, K. Fahl, A. Fluegge, K. Freeman, M. Goñi, U. Güntner, D. Hartz, S. Hellebust, T. Herbert, M. Ikehara, R. Ishiwatari, K. Kawamura, F. Kenig, J. de Leeuw, S. Lehman, N. Ohkouchi, R. D Pancost, C. Pelejero, F. Prahl, J. Quinn, J.-F. Rotani, F. Rostek, J. Rullkötter, J. Sachs, T. Blanz, K. Sawada, D. Schulz-Bull, E. Sikes, C. Sonzogni, Y. Ternois, G. Versteegh, J. Volkman, and S. Wakeham. 2001. Precision of the current methods to measure alkenone relative U and absolute abundances in sediments: Results of an inter-laboratory comparison study. Geochemistry Geophysics Geosystems 2, Paper 2000GC000141, July 6, 2001. doi: 10.1029/2000GC000141
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Savidge, D. K., and J. M. Bane, Jr. 2001. Wind and Gulf Stream influences on along-shelf transport and off-shelf export at Cape Hatteras, North Carolina. Journal of Geophysical Research — Oceans 106(C6): 11505-11527. doi: 10.1029/2000JC000574
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Schouten, S., S. G. Wakeham, and J. S. Sinninghe Damsté. 2001. Evidence for anaerobic methane oxidation by archaea in euxinic waters of the Black Sea. Organic Geochemistry 32(10): 1277-1281. doi: 10.1016/S0146-6380(01)00110-3
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Wakeham, S. G., J. P. Cowen, B. J. Burd, and R. E. Thomson. 2001. Lipid-rich ascending particles from the hydrothermal plume at Endeavour Segment, Juan de Fuca Ridge. Geochimica et Cosmochimica Acta 65(6): 923-939. doi: 10.1016/S0016-7037(00)00580-9
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2000
Blanton, J. O., M. A. Ferreira, and F. A. Andrade. 2000. Effect of a broad shallow sill on tidal circulation and salt transport in the entrance to a coastal plain estuary (Mira: Vila Nova de Milfontes, Portugal). Estuaries 23(3): 293-304. Stable URL: http://www.jstor.org/stable/1353322
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Cruickshank, J., and S. Hall. 2000. Coordinating current awareness, document delivery and interlibrary loan for branch library services. Proceedings of the Mississippi Library Association Annual Conference 2000.
Frischer, M. E., J. M. Danforth, L. C. Tyner, J. R. Leverone, D. C. Marelli, W. S. Arnold, and N. J. Blake. 2000. Development of an Argopecten-specific 18S rRNA targeted genetic probe. Marine Biotechnology 2(1): 11-20. doi: 10.1007/s101269900003
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Frischer, M. E., J. M. Danforth, M. A. Newton Healy, and F. M. Saunders. 2000. Whole-cell versus total RNA extraction for analysis of microbial community structure with 16S rRNA-targeted oligonucleotide probes in salt marsh sediments. Applied and Environmental Microbiology 66(7): 3037-3043. doi: 10.1128/AEM.66.7.3037-3043.2000
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Frischer, M. E., S. A. Nierzwicki-Bauer, R. H. Parsons, K. Vathanodorn, and K. R. Waitkus. 2000. Interactions between zebra mussels (Dreissena polymorpha) and microbial communities. Canadian Journal of Fisheries and Aquatic Sciences 57(3): 591-599. doi: 10.1139/f00-001
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Jahnke, R. A., and D. B. Jahnke. 2000. Rates of C, N, P and Si recycling and denitrification at the U. S. mid-Atlantic continental slope depocenter. Deep Sea Research Part I: Oceanographic Research Papers 47(8): 1405-1428. doi: 10.1016/S0967-0637(99)00118-1
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Jahnke, R. A., J. R. Nelson, R. L. Marinelli, and J. E. Eckman. 2000. Benthic flux of biogenic elements on the Southeastern U. S. continental shelf: Influence of pore water advective transport and benthic microalgae. Continental Shelf Research 20:109-127. doi: 10.1016/S0278-4343(99)00063-1
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King, J. K., J. E. Kostka, M. E. Frischer, and F. M. Saunders. 2000. Sulfate-reducing bacteria methylate mercury at variable rates in pure culture and in marine sediments. Applied and Environmental Microbiology 66(6): 2430-2437. doi: 10.1128/AEM.66.6.2430-2437.2000
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Lee, C., S. G. Wakeham, and J. I . Hedges. 2000. Composition and flux of particulate amino acids and chloropigments in equatorial Pacific seawater and sediments. Deep Sea Research Part I: Oceanographic Research Papers 47(8): 1535-1568. doi: 10.1016/S0967-0637(99)00116-8
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Mann, E. L., and S. W. Chisholm. 2000. Iron limits the cell division rate of Prochlorococcus in the eastern equatorial Pacific. Limnology and Oceanography 45(5): 1067-1076.
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Maruya, K. A., S. G. Wakeham, W. Vetter, and L. Francendese. 2000. Prominent chlorobornane residues in estuarine sediments contaminated with toxaphene. Environmental Toxicology and Chemistry 19(9): 2198-2203. doi: 10.1002/etc.5620190908
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Maruya, K. A., W. Vetter, S. G. Wakeham, R. F. Lee, and L. Francendese. 2000. Selective persistence and bioaccumulation of toxaphene in a coastal wetland. In Persistent, Bioaccumulative, and Toxic Chemicals I: Fate and Exposure, ACS Symposium Series, Vol. 772, eds. R. L. Lipnick, J. L. M. Hermens, K. C. Jones, and D. C. G. Mui, 164-175. Washington, DC: American Chemical Society.
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Paffenhöfer, G.-A., and P. A. Loyd. 2000. Ultrastructure of cephalic appendage setae of marine planktonic copepods. Marine Ecology Progress Series 203:171-180. doi: 10.3354/meps203171
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Pantoja, S., and S. Wakeham. 2000. Marine organic geochemistry: A general overview. In Chemical Processes in Marine Environments, ed. A. Gianguzza, E. Pelizzetti, and S. Sammartano, 44-74. Berlin: Springer. doi: 10.1007/978-3-662-04207-6_3
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Riedel, G. F., S. A. Williams, G. S. Riedel, C. C. Gilmour, and J. G. Sanders. 2000. Temporal and spatial patterns of trace elements in the Patuxent River: A whole watershed approach. Estuaries 23(4):521-535. Stable URL: http://www.jstor.org/stable/1353143
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Wakeham, S. G. 2000. Organic matter preservation in the ocean: Lipid behavior from plankton to sediments. In Chemical Processes in Marine Environments, ed. A. Gianguzza, E. Pelizzetti, and S. Sammartano, 128-139. Berlin: Springer. doi: 10.1007/978-3-662-04207-6_6
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Wakeham, S. G., C. Lee, and J. I. Hedges. 2000. Fluxes of major biochemicals in the equatorial Pacific Ocean. In Dynamics and Characterization of Marine Organic Matter, ed. N. Handa, E. Tanoue, and T. Hama, 117-140. Dordrecht: Springer Netherlands. doi: 10.1007/978-94-017-1319-1_6
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